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Genome Meta Information:
Rothia mucilaginosa L2_038_092G1_dasL2_038_092G1_concoct_40 (GCA_018381075.1)
| HOMD Genome-ID | GCA_018381075.1 |
| HOMD Taxon-ID | HMT-681 |
| Species Name (in use by HOMD) | Rothia mucilaginosa |
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 L2_038_092G1_dasL2_038_092G1_concoct_40 |
| Strain or Isolate | L2_038_092G1_dasL2_038_092G1_concoct_40 |
| GTDB Taxonomy | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;
s__Rothia mucilaginosa |
| Sequencing Technology | Illumina NovaSeq 6000 |
| Genome Coverage | 14.6x |
| Contigs |
Number of Contigs: 57
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| Total Sequence Length | 2,233,101 (bp) |
| GC Percentage | 59.53 |
| MAG | yes |
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/075/GCA_018381075.1_ASM1838107v1 |
| CDS | 1730 |
| Genes | 1796 |
| mRNA | 1796 |
| misc RNA | 13 |
| rRNA | 4 |
| tRNA | 48 |
| tmRNA | 1 |
| CRISPR-cas |
No Available Data |
| Pangenomes (Beta) |
Rothia__mucilaginosa__HMT_147_681
Open SVG
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| Genome Assembly Name | ASM1838107v1 |
| GenBank Assembly Accession |
GCA_018381075.1
[NCBI]
[GTDB]
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| RefSeq Assembly Accession |
GCF_018381075.1
[NCBI]
|
| BioSample |
SAMN17801127
[NCBI]
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| BioProject |
PRJNA698986
[NCBI]
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| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:22.203 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | live |
| WGS Project | JAGZSM01 |
| NCBI TaxID | 43675 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
| ANI (Average Nucluotide Identity) | 95.75 % |
| CheckM Completeness | 98.75 % |
| CheckM Percentile | 61.666668 % |
| CheckM Contamination | 1.1 % |
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