Taxon Table | Genome Table
Genome Meta Information:
Veillonella
atypica
L2_023_015G1_dasL2_023_015G1_concoct_7 (GCA_018381415.1)
| HOMD Genome-ID |
GCA_018381415.1
|
| HOMD Taxon-ID |
HMT-0524
|
| Species Name (in use by HOMD) |
Veillonella atypica
|
| Organism Name (as deposited) |
HMT-524 Veillonella atypica L2_023_015G1_dasL2_023_015G1_concoct_7
|
| Strain or Isolate |
L2_023_015G1_dasL2_023_015G1_concoct_7
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;
s__Veillonella atypica |
| Sequencing Technology |
Illumina NovaSeq 6000
|
| Genome Coverage |
46.7214
|
| Contigs |
Number of Contigs: 183
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,024,019 (bp) |
| GC Percentage |
39.12
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/415/GCA_018381415.1_ASM1838141v1
|
| CDS |
1836
|
| Genes |
1900
|
| mRNA |
1900
|
| misc RNA |
19
|
| rRNA |
2
|
| tRNA |
42
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
97.69 %
|
| CheckM Contamination |
5 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1838141v1
|
| GenBank Assembly Accession |
GCA_018381415.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_018381415.1
[NCBI]
|
| BioSample |
SAMN17801112
[NCBI]
|
| BioProject |
PRJNA698986
[NCBI]
|
| Submitter |
University of California, Berkeley
|
| Submission Date |
2021-02-04T18:19:21.903
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAGZRX01
|
| NCBI TaxID |
1926307
|
| Isolation Source |
infant feces
|
| Geo Location |
USA: Pittsburgh, Magee-Womens
|
