Genome Meta Information: Veillonella parvula L2_022_103G1_dasL2_022_103G1_maxbin2.maxbin.005 (GCA_018381475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018381475.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula L2_022_103G1_dasL2_022_103G1_maxbin2.maxbin.005 | ||
| Strain or Isolate | L2_022_103G1_dasL2_022_103G1_maxbin2.maxbin.005 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella parvula_E |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 61.0945 | ||
| Contigs |
|
||
| Total Sequence Length | 2,073,460 (bp) | ||
| GC Percentage | 38.57 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/475/GCA_018381475.1_ASM1838147v1 | ||
| CDS | 1857 | ||
| Genes | 1921 | ||
| mRNA | 1921 | ||
| misc RNA | 22 | ||
| rRNA | 2 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.89 % | ||
| CheckM Contamination | 0.05 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1838147v1 |
| GenBank Assembly Accession | GCA_018381475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018381475.1 [NCBI] |
| BioSample | SAMN17801109 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:21.853 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZRU01 |
| NCBI TaxID | 1926307 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
