Genome Meta Information: Streptococcus parasanguinis P468302 (GCA_018499465.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018499465.1 | ||
| HOMD Taxon-ID | HMT-0411 | ||
| Species Name (in use by HOMD) | Streptococcus parasanguinis | ||
| Organism Name (as deposited) | HMT-411 Streptococcus parasanguinis P468302 | ||
| Strain or Isolate | P468302 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus parasanguinis_K |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 150 | ||
| Contigs |
|
||
| Total Sequence Length | 1,965,434 (bp) | ||
| GC Percentage | 41.99 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/499/465/GCA_018499465.1_ASM1849946v1 | ||
| CDS | 1852 | ||
| Genes | 1948 | ||
| mRNA | 1948 | ||
| misc RNA | 44 | ||
| rRNA | 5 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.71 % | ||
| CheckM Completeness | 96.87 % | ||
| CheckM Contamination | 0.66 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1849946v1 |
| GenBank Assembly Accession | GCA_018499465.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018499465.1 [NCBI] |
| BioSample | SAMN19268632 [NCBI] |
| BioProject | PRJNA731113 [NCBI] |
| Submitter | Univ. of Maryland |
| Submission Date | 2021-05-19T11:20:06.333 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHDAA01 |
| NCBI TaxID | 1318 |
| Isolation Source | stool |
| Geo Location | Kenya:Kibera |
