Genome Meta Information: Streptococcus infantis PA11599CN2 (GCA_018499575.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018499575.1 | ||
| HOMD Taxon-ID | HMT-0638 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-638 Streptococcus infantis clade-638 PA11599CN2 | ||
| Strain or Isolate | PA11599CN2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis_K |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 150 | ||
| Contigs |
|
||
| Total Sequence Length | 1,716,789 (bp) | ||
| GC Percentage | 39.6 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/499/575/GCA_018499575.1_ASM1849957v1 | ||
| CDS | 1648 | ||
| Genes | 1730 | ||
| mRNA | 0 | ||
| misc RNA | 33 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 91.28 % | ||
| CheckM Completeness | 97.66 % | ||
| CheckM Contamination | 1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1849957v1 |
| GenBank Assembly Accession | GCA_018499575.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018499575.1 [NCBI] |
| BioSample | SAMN19268615 [NCBI] |
| BioProject | PRJNA731113 [NCBI] |
| Submitter | Univ. of Maryland |
| Submission Date | 2021-05-19T11:20:06.087 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHDAP01 |
| NCBI TaxID | 68892 |
| Isolation Source | stool |
| Geo Location | Kenya:Lwak |
