Genome Meta Information: Streptococcus mutans E681 (GCA_018619415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018619415.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans E681 | ||
| Strain or Isolate | E681 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 1223 | ||
| Contigs |
|
||
| Total Sequence Length | 2,003,248 (bp) | ||
| GC Percentage | 36.84 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/619/415/GCA_018619415.1_ASM1861941v1 | ||
| CDS | 1865 | ||
| Genes | 1942 | ||
| mRNA | 1942 | ||
| misc RNA | 24 | ||
| rRNA | 4 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 95.02 % | ||
| CheckM Contamination | 1.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1861941v1 |
| GenBank Assembly Accession | GCA_018619415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018619415.1 [NCBI] |
| BioSample | SAMN19353794 [NCBI] |
| BioProject | PRJNA732902 [NCBI] |
| Submitter | University of Mississippi Medical Center |
| Submission Date | 2021-05-26T15:28:05.433 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHHFU01 |
| NCBI TaxID | 1309 |
| Isolation Source | eye |
| Geo Location | USA: Pittsburgh, PA |
