Genome Meta Information: Akkermansia muciniphila Akk0500b (GCA_018847595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018847595.1 | ||
| HOMD Taxon-ID | HMT-963 | ||
| Species Name (in use by HOMD) | Akkermansia muciniphila | ||
| Organism Name (as deposited) | HMT-963 Akkermansia muciniphila Akk0500b | ||
| Strain or Isolate | Akk0500b | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia; s__Akkermansia muciniphila |
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| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 549.0x | ||
| Contigs |
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| Total Sequence Length | 2,788,976 (bp) | ||
| GC Percentage | 55.4 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/847/595/GCA_018847595.1_ASM1884759v1 | ||
| CDS | 2343 | ||
| Genes | 2411 | ||
| mRNA | 2411 | ||
| misc RNA | 5 | ||
| rRNA | 9 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.34 % | ||
| CheckM Completeness | 97.24 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.17 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1884759v1 |
| GenBank Assembly Accession | GCA_018847595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018847595.1 [NCBI] |
| BioSample | SAMN18350238 [NCBI] |
| BioProject | PRJNA715455 [NCBI] |
| Submitter | Duke University |
| Submission Date | 2021-03-18T12:39:06.616 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 239935 |
| Isolation Source | |
| Geo Location | USA:Durham, North Carolina |
