Genome Meta Information: Staphylococcus haemolyticus C128_MRS_SCCmec type VII/X (GCA_019349055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019349055.1 | ||
| HOMD Taxon-ID | HMT-0120 | ||
| Species Name (in use by HOMD) | Staphylococcus haemolyticus | ||
| Organism Name (as deposited) | HMT-120 Staphylococcus haemolyticus C128_MRS_SCCmec type VII/X | ||
| Strain or Isolate | C128_MRS_SCCmec type VII/X | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus haemolyticus |
||
| Sequencing Technology | Oxford Nanopore; Illumina NovaSeq | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,842,834 (bp) | ||
| GC Percentage | 32.76 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/349/055/GCA_019349055.1_ASM1934905v1 | ||
| CDS | 2926 | ||
| Genes | 3118 | ||
| mRNA | 3118 | ||
| misc RNA | 110 | ||
| rRNA | 19 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.35 % | ||
| CheckM Completeness | 96.93 % | ||
| CheckM Contamination | 3.93 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1934905v1 |
| GenBank Assembly Accession | GCA_019349055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14151386 [NCBI] |
| BioProject | PRJNA607920 [NCBI] |
| Submitter | University of Liege-Faculty of veterinary medicine |
| Submission Date | 2020-02-21T09:00:06.436 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAASKZ01 |
| NCBI TaxID | 1283 |
| Isolation Source | milk |
| Geo Location | Belgium |
