Genome Meta Information: Streptococcus pseudopneumoniae SLA982 (GCA_019456875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019456875.1 | ||
| HOMD Taxon-ID | HMT-0425 | ||
| Species Name (in use by HOMD) | Streptococcus pseudopneumoniae | ||
| Organism Name (as deposited) | HMT-425 Streptococcus pseudopneumoniae SLA982 | ||
| Strain or Isolate | SLA982 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pseudopneumoniae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 99 | ||
| Contigs |
|
||
| Total Sequence Length | 2,187,633 (bp) | ||
| GC Percentage | 39.84 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/456/875/GCA_019456875.1_ASM1945687v1 | ||
| CDS | 2143 | ||
| Genes | 2255 | ||
| mRNA | 2255 | ||
| misc RNA | 66 | ||
| rRNA | 3 | ||
| tRNA | 42 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.26 % | ||
| CheckM Completeness | 96.38 % | ||
| CheckM Contamination | 2.65 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1945687v1 |
| GenBank Assembly Accession | GCA_019456875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019456875.1 [NCBI] |
| BioSample | SAMN16078580 [NCBI] |
| BioProject | PRJNA662229 [NCBI] |
| Submitter | Region Zealand |
| Submission Date | 2020-09-08T08:42:06.297 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JACVSZ01 |
| NCBI TaxID | 257758 |
| Isolation Source | sputum |
| Geo Location | Denmark: Slagelse |
