Genome Meta Information: Veillonella parvula K63 (GCA_019731115.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019731115.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula K63 | ||
| Strain or Isolate | K63 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella parvula_E |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,074,582 (bp) | ||
| GC Percentage | 38.73 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/731/115/GCA_019731115.1_ASM1973111v1 | ||
| CDS | 1823 | ||
| Genes | 1897 | ||
| mRNA | 1897 | ||
| misc RNA | 24 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.51 % | ||
| CheckM Completeness | 97.2 % | ||
| CheckM Contamination | 1.87 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1973111v1 |
| GenBank Assembly Accession | GCA_019731115.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019731115.1 [NCBI] |
| BioSample | SAMN14389591 [NCBI] |
| BioProject | PRJNA612981 [NCBI] |
| Submitter | Heilongjiang bayi agricultural university |
| Submission Date | 2020-03-17T08:10:47.160 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAASJV01 |
| NCBI TaxID | 29466 |
| Isolation Source | feces |
| Geo Location | China |
