Genome Meta Information: Streptococcus oralis SK141 (GCA_019929265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019929265.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis SK141 | ||
| Strain or Isolate | SK141 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_G |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 55 | ||
| Contigs |
|
||
| Total Sequence Length | 1,870,517 (bp) | ||
| GC Percentage | 41.07 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/265/GCA_019929265.1_ASM1992926v1 | ||
| CDS | 1809 | ||
| Genes | 1917 | ||
| mRNA | 1917 | ||
| misc RNA | 55 | ||
| rRNA | 6 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.58 % | ||
| CheckM Completeness | 96.96 % | ||
| CheckM Contamination | 0.9 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1992926v1 |
| GenBank Assembly Accession | GCA_019929265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019929265.1 [NCBI] |
| BioSample | SAMN20399943 [NCBI] |
| BioProject | PRJNA749742 [NCBI] |
| Submitter | Institute for Genome Sciences, University of Maryland, Baltimore |
| Submission Date | 2021-07-26T13:03:06.440 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHZPE01 |
| NCBI TaxID | 1303 |
| Isolation Source | dental plaque |
| Geo Location | missing |
