Genome Meta Information: Streptococcus infantis SY98 (GCA_019929575.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019929575.1 | ||
| HOMD Taxon-ID | HMT-0431 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-431 Streptococcus infantis clade-431 SY98 | ||
| Strain or Isolate | SY98 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis_L |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 49 | ||
| Contigs |
|
||
| Total Sequence Length | 1,969,673 (bp) | ||
| GC Percentage | 39.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/575/GCA_019929575.1_ASM1992957v1 | ||
| CDS | 1883 | ||
| Genes | 1971 | ||
| mRNA | 0 | ||
| misc RNA | 43 | ||
| rRNA | 4 | ||
| tRNA | 40 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.9 % | ||
| CheckM Completeness | 95.55 % | ||
| CheckM Contamination | 1.94 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1992957v1 |
| GenBank Assembly Accession | GCA_019929575.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019929575.1 [NCBI] |
| BioSample | SAMN20399927 [NCBI] |
| BioProject | PRJNA749742 [NCBI] |
| Submitter | Institute for Genome Sciences, University of Maryland, Baltimore |
| Submission Date | 2021-07-26T13:03:06.233 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHZPU01 |
| NCBI TaxID | 68892 |
| Isolation Source | dental plaque |
| Geo Location | USA: Buffalo, NY |
