Genome Meta Information: Capnocytophaga ochracea FDAARGOS_1468 (GCA_019930725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019930725.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea FDAARGOS_1468 | ||
| Strain or Isolate | FDAARGOS_1468 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 1984.57 | ||
| Contigs |
|
||
| Total Sequence Length | 2,615,469 (bp) | ||
| GC Percentage | 39.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/725/GCA_019930725.1_ASM1993072v1 | ||
| CDS | 2183 | ||
| Genes | 2252 | ||
| mRNA | 2252 | ||
| misc RNA | 9 | ||
| rRNA | 12 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.45 % | ||
| CheckM Contamination | 0.12 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1993072v1 |
| GenBank Assembly Accession | GCA_019930725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019930725.1 [NCBI] |
| BioSample | SAMN20888885 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2021-08-20T16:18:23.770 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1018 |
| Isolation Source | missing |
| Geo Location | Germany: Braunschweig |
