Genome Meta Information: Bifidobacterium longum NBRC 114494 (GCA_020353915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020353915.1 | ||
| HOMD Taxon-ID | HMT-0862 | ||
| Species Name (in use by HOMD) | Bifidobacterium longum | ||
| Organism Name (as deposited) | HMT-862 Bifidobacterium longum NBRC 114494 | ||
| Strain or Isolate | NBRC 114494 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium longum |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore GridION | ||
| Genome Coverage | 509 | ||
| Contigs |
|
||
| Total Sequence Length | 2,534,372 (bp) | ||
| GC Percentage | 60.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/353/915/GCA_020353915.1_ASM2035391v1 | ||
| CDS | 2126 | ||
| Genes | 2207 | ||
| mRNA | 2207 | ||
| misc RNA | 14 | ||
| rRNA | 8 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.86 % | ||
| CheckM Completeness | 99.85 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2035391v1 |
| GenBank Assembly Accession | GCA_020353915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020353915.1 [NCBI] |
| BioSample | SAMN21163593 [NCBI] |
| BioProject | PRJNA747117 [NCBI] |
| Submitter | National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute |
| Submission Date | 2021-09-01T00:52:05.226 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1679 |
| Isolation Source | human feces |
| Geo Location | Japan |
