Genome Meta Information: Streptococcus salivarius E31 (GCA_020404185.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020404185.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius E31 | ||
| Strain or Isolate | E31 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius_E |
||
| Sequencing Technology | Illumina HiSeq 3000 | ||
| Genome Coverage | 376 | ||
| Contigs |
|
||
| Total Sequence Length | 2,151,131 (bp) | ||
| GC Percentage | 39.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/404/185/GCA_020404185.1_ASM2040418v1 | ||
| CDS | 1939 | ||
| Genes | 2018 | ||
| mRNA | 2018 | ||
| misc RNA | 35 | ||
| rRNA | 3 | ||
| tRNA | 40 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.43 % | ||
| CheckM Completeness | 97.77 % | ||
| CheckM Contamination | 0.83 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2040418v1 |
| GenBank Assembly Accession | GCA_020404185.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020404185.1 [NCBI] |
| BioSample | SAMN21924259 [NCBI] |
| BioProject | PRJNA767413 [NCBI] |
| Submitter | Oregon State University |
| Submission Date | 2021-09-30T17:56:05.940 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAIZBZ01 |
| NCBI TaxID | 1304 |
| Isolation Source | cheese processing environment |
| Geo Location | USA: Oregon |
