Genome Meta Information: Veillonella parvula DFI.7.67 (GCA_020559605.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020559605.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula DFI.7.67 | ||
| Strain or Isolate | DFI.7.67 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella parvula_I |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,155,102 (bp) | ||
| GC Percentage | 38.64 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/559/605/GCA_020559605.1_ASM2055960v1 | ||
| CDS | 1894 | ||
| Genes | 1972 | ||
| mRNA | 1972 | ||
| misc RNA | 21 | ||
| rRNA | 8 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.38 % | ||
| CheckM Completeness | 97.08 % | ||
| CheckM Contamination | 2.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2055960v1 |
| GenBank Assembly Accession | GCA_020559605.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020559605.1 [NCBI] |
| BioSample | SAMN22167488 [NCBI] |
| BioProject | PRJNA737800 [NCBI] |
| Submitter | University of Chicago |
| Submission Date | 2021-10-08T16:33:08.670 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAJCLM01 |
| NCBI TaxID | 29466 |
| Isolation Source | fecal sample |
| Geo Location | USA:Chicago |
