Taxon Table | Genome Table
Genome Meta Information:
Streptococcus
parasanguinis
DFI.3.149 (GCA_020560885.1)
| HOMD Genome-ID |
GCA_020560885.1
|
| HOMD Taxon-ID |
HMT-0411
|
| Species Name (in use by HOMD) |
Streptococcus parasanguinis
|
| Organism Name (as deposited) |
HMT-411 Streptococcus parasanguinis DFI.3.149
|
| Strain or Isolate |
DFI.3.149
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;
s__Streptococcus parasanguinis_S |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
100
|
| Contigs |
Number of Contigs: 252
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,204,240 (bp) |
| GC Percentage |
41.89
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/560/885/GCA_020560885.1_ASM2056088v1
|
| CDS |
2070
|
| Genes |
2150
|
| mRNA |
2150
|
| misc RNA |
36
|
| rRNA |
3
|
| tRNA |
40
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
94.27 %
|
| CheckM Completeness |
98.76 %
|
| CheckM Contamination |
1.07 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM2056088v1
|
| GenBank Assembly Accession |
GCA_020560885.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_020560885.1
[NCBI]
|
| BioSample |
SAMN22167429
[NCBI]
|
| BioProject |
PRJNA737800
[NCBI]
|
| Submitter |
University of Chicago
|
| Submission Date |
2021-10-08T16:33:07.683
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAJCND01
|
| NCBI TaxID |
1318
|
| Isolation Source |
fecal sample
|
| Geo Location |
USA:Chicago
|
