Genome Meta Information: Streptococcus vestibularis DFI.4.125 (GCA_020590155.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020590155.1 | ||
| HOMD Taxon-ID | HMT-0021 | ||
| Species Name (in use by HOMD) | Streptococcus vestibularis | ||
| Organism Name (as deposited) | HMT-021 Streptococcus vestibularis DFI.4.125 | ||
| Strain or Isolate | DFI.4.125 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus vestibularis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,931,486 (bp) | ||
| GC Percentage | 39.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/590/155/GCA_020590155.1_ASM2059015v1 | ||
| CDS | 1871 | ||
| Genes | 1949 | ||
| mRNA | 1949 | ||
| misc RNA | 39 | ||
| rRNA | 2 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.52 % | ||
| CheckM Completeness | 99.76 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2059015v1 |
| GenBank Assembly Accession | GCA_020590155.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020590155.1 [NCBI] |
| BioSample | SAMN22167609 [NCBI] |
| BioProject | PRJNA737800 [NCBI] |
| Submitter | University of Chicago |
| Submission Date | 2021-10-08T16:33:10.823 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAJDKS01 |
| NCBI TaxID | 1343 |
| Isolation Source | fecal sample |
| Geo Location | USA:Chicago |
