Genome Meta Information: Staphylococcus lugdunensis SS167_SL_UNIFESP (GCA_020682785.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020682785.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis SS167_SL_UNIFESP | ||
| Strain or Isolate | SS167_SL_UNIFESP | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 199.63 | ||
| Contigs |
|
||
| Total Sequence Length | 2,548,401 (bp) | ||
| GC Percentage | 33.7 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/682/785/GCA_020682785.1_ASM2068278v1 | ||
| CDS | 2351 | ||
| Genes | 2508 | ||
| mRNA | 2508 | ||
| misc RNA | 84 | ||
| rRNA | 7 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.45 % | ||
| CheckM Completeness | 96.61 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2068278v1 |
| GenBank Assembly Accession | GCA_020682785.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020682785.1 [NCBI] |
| BioSample | SAMN19669000 [NCBI] |
| BioProject | PRJNA736948 [NCBI] |
| Submitter | Universidade Federal de Sao Paulo (UNIFESP) |
| Submission Date | 2021-06-11T11:21:05.480 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHMMV01 |
| NCBI TaxID | 28035 |
| Isolation Source | orthopedic device (ODRI) sonication fluid |
| Geo Location | Brazil: Sao Paulo |
