Genome Meta Information: Capnocytophaga ochracea FDAARGOS_1550 (GCA_020736165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020736165.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea FDAARGOS_1550 | ||
| Strain or Isolate | FDAARGOS_1550 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 1887.46 | ||
| Contigs |
|
||
| Total Sequence Length | 2,713,235 (bp) | ||
| GC Percentage | 39.43 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/165/GCA_020736165.1_ASM2073616v1 | ||
| CDS | 2248 | ||
| Genes | 2318 | ||
| mRNA | 2318 | ||
| misc RNA | 10 | ||
| rRNA | 12 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.22 % | ||
| CheckM Completeness | 97.53 % | ||
| CheckM Contamination | 0.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2073616v1 |
| GenBank Assembly Accession | GCA_020736165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020736165.1 [NCBI] |
| BioSample | SAMN22091647 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2021-10-06T15:31:04.740 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1018 |
| Isolation Source | missing |
| Geo Location | Germany: Braunschweig |
