Genome Meta Information: Streptococcus thermophilus 4078 (GCA_020844005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020844005.1 | ||
| HOMD Taxon-ID | HMT-0152 | ||
| Species Name (in use by HOMD) | Streptococcus thermophilus | ||
| Organism Name (as deposited) | HMT-152 Streptococcus thermophilus 4078 | ||
| Strain or Isolate | 4078 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus thermophilus |
||
| Sequencing Technology | PacBio RSII; Illumina MiSeq | ||
| Genome Coverage | 85 | ||
| Contigs |
|
||
| Total Sequence Length | 1,837,840 (bp) | ||
| GC Percentage | 39.08 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/844/005/GCA_020844005.1_ASM2084400v1 | ||
| CDS | 1942 | ||
| Genes | 2105 | ||
| mRNA | 2105 | ||
| misc RNA | 77 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.7 % | ||
| CheckM Completeness | 98.11 % | ||
| CheckM Contamination | 0.76 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2084400v1 |
| GenBank Assembly Accession | GCA_020844005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020844005.1 [NCBI] |
| BioSample | SAMN16933231 [NCBI] |
| BioProject | PRJNA681777 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2020-11-27T05:37:05.147 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1308 |
| Isolation Source | Dairy |
| Geo Location | Ireland |
