Genome Meta Information: Staphylococcus warneri HL28 (GCA_021117155.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_021117155.1 | ||
| HOMD Taxon-ID | HMT-0076 | ||
| Species Name (in use by HOMD) | Staphylococcus warneri | ||
| Organism Name (as deposited) | HMT-076 Staphylococcus warneri HL28 | ||
| Strain or Isolate | HL28 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus warneri |
||
| Sequencing Technology | Oxford Nanopore MinION; Illumina NovaSeq | ||
| Genome Coverage | 2301 | ||
| Contigs |
|
||
| Total Sequence Length | 2,562,829 (bp) | ||
| GC Percentage | 32.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/117/155/GCA_021117155.1_ASM2111715v1 | ||
| CDS | 2437 | ||
| Genes | 2575 | ||
| mRNA | 2575 | ||
| misc RNA | 56 | ||
| rRNA | 19 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.25 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2111715v1 |
| GenBank Assembly Accession | GCA_021117155.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_021117155.1 [NCBI] |
| BioSample | SAMN23296442 [NCBI] |
| BioProject | PRJNA781799 [NCBI] |
| Submitter | Changwon National University |
| Submission Date | 2021-11-19T05:39:06.136 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2897335 |
| Isolation Source | human skin swab |
| Geo Location | South Korea: Changwon |
