Genome Meta Information: Aggregatibacter actinomycetemcomitans 467G (GCA_021310165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_021310165.1 | ||
| HOMD Taxon-ID | HMT-531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans 467G | ||
| Strain or Isolate | 467G | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 95.0x | ||
| Contigs |
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| Total Sequence Length | 2,122,954 (bp) | ||
| GC Percentage | 44.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/165/GCA_021310165.1_ASM2131016v1 | ||
| CDS | 2040 | ||
| Genes | 2149 | ||
| mRNA | 2149 | ||
| misc RNA | 58 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.91 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.04 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2131016v1 |
| GenBank Assembly Accession | GCA_021310165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_021310165.1 [NCBI] |
| BioSample | SAMN14969745 [NCBI] |
| BioProject | PRJNA633763 [NCBI] |
| Submitter | Aarhus University Hospital, Denmark |
| Submission Date | 2020-05-19T07:05:05.633 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABKAA01 |
| NCBI TaxID | 714 |
| Isolation Source | subgingival plaque |
| Geo Location | Ghana |
