Genome Meta Information: Fusobacterium necrophorum MAG39 (GCA_021443685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_021443685.1 | ||
| HOMD Taxon-ID | HMT-0690 | ||
| Species Name (in use by HOMD) | Fusobacterium necrophorum | ||
| Organism Name (as deposited) | HMT-690 Fusobacterium necrophorum MAG39 | ||
| Strain or Isolate | MAG39 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C; s__Fusobacterium_C necrophorum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 89.05 | ||
| Contigs |
|
||
| Total Sequence Length | 2,954,775 (bp) | ||
| GC Percentage | 36.5 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/443/685/GCA_021443685.1_ASM2144368v1 | ||
| CDS | 2742 | ||
| Genes | 2774 | ||
| mRNA | 2774 | ||
| misc RNA | 18 | ||
| rRNA | 0 | ||
| tRNA | 13 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.89 % | ||
| CheckM Completeness | 96.88 % | ||
| CheckM Contamination | 11.21 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2144368v1 |
| GenBank Assembly Accession | GCA_021443685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_021443685.1 [NCBI] |
| BioSample | SAMN15049497 [NCBI] |
| BioProject | PRJNA563062 [NCBI] |
| Submitter | Brazilian Center for Research in Energy and Materials (CNPEM) |
| Submission Date | 2020-05-28T18:02:06.696 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABUTM01 |
| NCBI TaxID | 859 |
| Isolation Source | Cecum and rectal contents from Capybaras |
| Geo Location | Brazil: Tatui |
