Genome Meta Information: Streptococcus pneumoniae LE4448 (GCA_022318425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022318425.1 | ||
| HOMD Taxon-ID | HMT-0734 | ||
| Species Name (in use by HOMD) | Streptococcus pneumoniae | ||
| Organism Name (as deposited) | HMT-734 Streptococcus pneumoniae LE4448 | ||
| Strain or Isolate | LE4448 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pneumoniae |
||
| Sequencing Technology | Oxford Nanopore MiniION | ||
| Genome Coverage | 52 | ||
| Contigs |
|
||
| Total Sequence Length | 2,003,723 (bp) | ||
| GC Percentage | 39.81 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/318/425/GCA_022318425.1_ASM2231842v1 | ||
| CDS | 1988 | ||
| Genes | 2129 | ||
| mRNA | 2129 | ||
| misc RNA | 70 | ||
| rRNA | 12 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.82 % | ||
| CheckM Completeness | 99.15 % | ||
| CheckM Contamination | 0.62 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2231842v1 |
| GenBank Assembly Accession | GCA_022318425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_022318425.1 [NCBI] |
| BioSample | SAMN08647548 [NCBI] |
| BioProject | PRJNA437292 [NCBI] |
| Submitter | Harvard University |
| Submission Date | 2018-03-07T11:36:13.220 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1313 |
| Isolation Source | nasopharyngeal |
| Geo Location | USA |
