Genome Meta Information: Corynebacterium mastitidis RC (GCA_022538035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022538035.1 | ||
| HOMD Taxon-ID | HMT-0328 | ||
| Species Name (in use by HOMD) | Corynebacterium mastitidis | ||
| Organism Name (as deposited) | HMT-328 Corynebacterium mastitidis RC | ||
| Strain or Isolate | RC | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium mastitidis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 89 | ||
| Contigs |
|
||
| Total Sequence Length | 2,153,054 (bp) | ||
| GC Percentage | 69.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/538/035/GCA_022538035.1_ASM2253803v1 | ||
| CDS | 2035 | ||
| Genes | 2104 | ||
| mRNA | 2104 | ||
| misc RNA | 11 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.65 % | ||
| CheckM Completeness | 96.95 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2253803v1 |
| GenBank Assembly Accession | GCA_022538035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_022538035.1 [NCBI] |
| BioSample | SAMN21033600 [NCBI] |
| BioProject | PRJNA758739 [NCBI] |
| Submitter | National Eye Institute |
| Submission Date | 2021-08-30T00:31:04.490 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAKRKB01 |
| NCBI TaxID | 161890 |
| Isolation Source | Conjunctiva |
| Geo Location | USA:Maryland |
