Genome Meta Information: Alistipes onderdonkii CE91-St17 (GCA_022834935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022834935.1 | ||
| HOMD Taxon-ID | HMT-964 | ||
| Species Name (in use by HOMD) | Alistipes onderdonkii | ||
| Organism Name (as deposited) | HMT-964 Alistipes onderdonkii CE91-St17 | ||
| Strain or Isolate | CE91-St17 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes onderdonkii |
||
| Sequencing Technology | Illumina MiSeq; PacBio Sequel | ||
| Genome Coverage | 361.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,811,789 (bp) | ||
| GC Percentage | 57.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/834/935/GCA_022834935.1_ASM2283493v1 | ||
| CDS | 3095 | ||
| Genes | 3165 | ||
| mRNA | 3165 | ||
| misc RNA | 18 | ||
| rRNA | 6 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.76 % | ||
| CheckM Completeness | 99.28 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.53 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2283493v1 |
| GenBank Assembly Accession | GCA_022834935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_022834935.1 [NCBI] |
| BioSample | SAMD00389856 [NCBI] |
| BioProject | PRJDB11902 [NCBI] |
| Submitter | Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN |
| Submission Date | 2021-07-08T13:06:52.433 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | BQNI01 |
| NCBI TaxID | 328813 |
| Isolation Source | |
| Geo Location | Japan |
