Genome Meta Information: Treponema pallidum TpN-CL2 (GCA_023016445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023016445.1 | ||
| HOMD Taxon-ID | HMT-0805 | ||
| Species Name (in use by HOMD) | Treponema pallidum | ||
| Organism Name (as deposited) | HMT-805 Treponema pallidum TpN-CL2 | ||
| Strain or Isolate | TpN-CL2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema; s__Treponema pallidum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 57.62 | ||
| Contigs |
|
||
| Total Sequence Length | 1,139,537 (bp) | ||
| GC Percentage | 52.79 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/016/445/GCA_023016445.1_ASM2301644v1 | ||
| CDS | 974 | ||
| Genes | 1028 | ||
| mRNA | 1028 | ||
| misc RNA | 2 | ||
| rRNA | 6 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 1.44 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2301644v1 |
| GenBank Assembly Accession | GCA_023016445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023016445.1 [NCBI] |
| BioSample | SAMN27502669 [NCBI] |
| BioProject | PRJNA825109 [NCBI] |
| Submitter | McGovern Medical School, Univ. of Texas Health Science Center at Houston |
| Submission Date | 2022-04-09T22:46:20.083 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 161 |
| Isolation Source | cerebrospinal fluid |
| Geo Location | USA: DC, Washington |
