Genome Meta Information: Actinomyces oris K20 (GCA_023169925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023169925.1 | ||
| HOMD Taxon-ID | HMT-043 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-043 Actinomyces oris clade-043 K20 | ||
| Strain or Isolate | K20 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces oris_A |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 25.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,119,201 (bp) | ||
| GC Percentage | 68.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/169/925/GCA_023169925.1_ASM2316992v1 | ||
| CDS | 2539 | ||
| Genes | 2614 | ||
| mRNA | 2614 | ||
| misc RNA | 13 | ||
| rRNA | 9 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.48 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.16 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2316992v1 |
| GenBank Assembly Accession | GCA_023169925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023169925.1 [NCBI] |
| BioSample | SAMD00442649 [NCBI] |
| BioProject | PRJDB13022 [NCBI] |
| Submitter | Actinomyces oris |
| Submission Date | 2022-03-04T01:00:57.093 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 871541 |
| Isolation Source | |
| Geo Location | Japan:Osaka |
