Genome Meta Information: Gardnerella piotii JNFY15 (GCA_023277585.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023277585.1 | ||
| HOMD Taxon-ID | HMT-0846 | ||
| Species Name (in use by HOMD) | Gardnerella piotii | ||
| Organism Name (as deposited) | HMT-846 Gardnerella piotii JNFY15 | ||
| Strain or Isolate | JNFY15 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium piotii |
||
| Sequencing Technology | Oxford Nanopore PromethION | ||
| Genome Coverage | 1 | ||
| Contigs |
|
||
| Total Sequence Length | 1,541,442 (bp) | ||
| GC Percentage | 42.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/277/585/GCA_023277585.1_ASM2327758v1 | ||
| CDS | 1160 | ||
| Genes | 1224 | ||
| mRNA | 1224 | ||
| misc RNA | 12 | ||
| rRNA | 6 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.68 % | ||
| CheckM Completeness | 99.81 % | ||
| CheckM Contamination | 0.11 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2327758v1 |
| GenBank Assembly Accession | GCA_023277585.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023277585.1 [NCBI] |
| BioSample | SAMN21246407 [NCBI] |
| BioProject | PRJNA761238 [NCBI] |
| Submitter | Shandong University |
| Submission Date | 2021-09-07T04:00:08.090 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2792977 |
| Isolation Source | vaginal secretion |
| Geo Location | China: Shandong |
