Genome Meta Information: Faecalibacterium prausnitzii IP-1-18 (GCA_023347355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023347355.1 | ||
| HOMD Taxon-ID | HMT-0961 | ||
| Species Name (in use by HOMD) | Faecalibacterium prausnitzii | ||
| Organism Name (as deposited) | HMT-961 Faecalibacterium prausnitzii IP-1-18 | ||
| Strain or Isolate | IP-1-18 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium; s__Faecalibacterium prausnitzii |
||
| Sequencing Technology | PacBio RSII; Illumina MiSeq | ||
| Genome Coverage | 45 | ||
| Contigs |
|
||
| Total Sequence Length | 3,038,545 (bp) | ||
| GC Percentage | 56.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/347/355/GCA_023347355.1_ASM2334735v1 | ||
| CDS | 2746 | ||
| Genes | 2872 | ||
| mRNA | 2872 | ||
| misc RNA | 44 | ||
| rRNA | 18 | ||
| tRNA | 63 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 94.72 % | ||
| CheckM Contamination | 4.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2334735v1 |
| GenBank Assembly Accession | GCA_023347355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023347355.1 [NCBI] |
| BioSample | SAMN26934697 [NCBI] |
| BioProject | PRJNA819544 [NCBI] |
| Submitter | AgResearch |
| Submission Date | 2022-03-24T23:26:03.946 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2929488 |
| Isolation Source | |
| Geo Location | New Zealand: Palmerston North |
