Genome Meta Information: Staphylococcus lugdunensis Q-058 (GCA_024104435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024104435.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis Q-058 | ||
| Strain or Isolate | Q-058 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 246.8 | ||
| Contigs |
|
||
| Total Sequence Length | 2,605,218 (bp) | ||
| GC Percentage | 33.71 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/435/GCA_024104435.1_ASM2410443v1 | ||
| CDS | 2437 | ||
| Genes | 2589 | ||
| mRNA | 2589 | ||
| misc RNA | 86 | ||
| rRNA | 7 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.53 % | ||
| CheckM Completeness | 97.42 % | ||
| CheckM Contamination | 1.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2410443v1 |
| GenBank Assembly Accession | GCA_024104435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024104435.1 [NCBI] |
| BioSample | SAMN19028252 [NCBI] |
| BioProject | PRJNA727671 [NCBI] |
| Submitter | The University of Hong Kong |
| Submission Date | 2021-05-05T22:34:05.420 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHAVF01 |
| NCBI TaxID | 28035 |
| Isolation Source | Wound specimen |
| Geo Location | China: Hong Kong |
