Genome Meta Information: Cutibacterium avidum HOL5 (GCA_024104895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024104895.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum HOL5 | ||
| Strain or Isolate | HOL5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 122 | ||
| Contigs |
|
||
| Total Sequence Length | 2,471,868 (bp) | ||
| GC Percentage | 63.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/895/GCA_024104895.1_ASM2410489v1 | ||
| CDS | 2252 | ||
| Genes | 2328 | ||
| mRNA | 2328 | ||
| misc RNA | 22 | ||
| rRNA | 6 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.69 % | ||
| CheckM Completeness | 94.53 % | ||
| CheckM Contamination | 2.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2410489v1 |
| GenBank Assembly Accession | GCA_024104895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024104895.1 [NCBI] |
| BioSample | SAMN19186359 [NCBI] |
| BioProject | PRJNA729908 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2021-05-14T07:30:10.367 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHDTV01 |
| NCBI TaxID | 33010 |
| Isolation Source | prosthetic joint infections |
| Geo Location | Netherlands: Groningen |
