Genome Meta Information: Cutibacterium avidum HS9 (GCA_024104995.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024104995.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum HS9 | ||
| Strain or Isolate | HS9 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 181 | ||
| Contigs |
|
||
| Total Sequence Length | 2,686,855 (bp) | ||
| GC Percentage | 63.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/995/GCA_024104995.1_ASM2410499v1 | ||
| CDS | 2454 | ||
| Genes | 2537 | ||
| mRNA | 2537 | ||
| misc RNA | 28 | ||
| rRNA | 5 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.46 % | ||
| CheckM Completeness | 92.59 % | ||
| CheckM Contamination | 8.55 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2410499v1 |
| GenBank Assembly Accession | GCA_024104995.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024104995.1 [NCBI] |
| BioSample | SAMN19186356 [NCBI] |
| BioProject | PRJNA729908 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2021-05-14T07:30:10.320 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHDTY01 |
| NCBI TaxID | 33010 |
| Isolation Source | healthy skin |
| Geo Location | Spain: Madrid |
