Genome Meta Information: Cutibacterium modestum 28N (GCA_024172845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024172845.1 | ||
| HOMD Taxon-ID | HMT-0193 | ||
| Species Name (in use by HOMD) | Cutibacterium modestum | ||
| Organism Name (as deposited) | HMT-193 Cutibacterium modestum 28N | ||
| Strain or Isolate | 28N | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium modestum |
||
| Sequencing Technology | Illumina; 454 | ||
| Genome Coverage | 853 | ||
| Contigs |
|
||
| Total Sequence Length | 2,631,115 (bp) | ||
| GC Percentage | 59.92 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/172/845/GCA_024172845.1_ASM2417284v1 | ||
| CDS | 2555 | ||
| Genes | 2633 | ||
| mRNA | 2633 | ||
| misc RNA | 24 | ||
| rRNA | 6 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.94 % | ||
| CheckM Completeness | 98.87 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2417284v1 |
| GenBank Assembly Accession | GCA_024172845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024172845.1 [NCBI] |
| BioSample | SAMN29439307 [NCBI] |
| BioProject | PRJNA162701 [NCBI] |
| Submitter | Bumgarner laboratory, Department of Microbiology, University of Washington |
| Submission Date | 2022-06-30T10:20:04.990 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ALWL01 |
| NCBI TaxID | 1182753 |
| Isolation Source | synovium from a patient with failed shoulder athroplasty |
| Geo Location | USA: WA |
