Genome Meta Information: Treponema vincentii OMZ 862 (GCA_024181125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024181125.1 | ||
| HOMD Taxon-ID | HMT-0029 | ||
| Species Name (in use by HOMD) | Treponema vincentii | ||
| Organism Name (as deposited) | HMT-029 Treponema vincentii clade-029 OMZ 862 | ||
| Strain or Isolate | OMZ 862 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema; s__Treponema vincentii |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore MiniION | ||
| Genome Coverage | 1115 | ||
| Contigs |
|
||
| Total Sequence Length | 2,717,368 (bp) | ||
| GC Percentage | 45.52 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/125/GCA_024181125.1_ASM2418112v1 | ||
| CDS | 2446 | ||
| Genes | 2508 | ||
| mRNA | 2508 | ||
| misc RNA | 5 | ||
| rRNA | 6 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 94.18 % | ||
| CheckM Contamination | 4.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2418112v1 |
| GenBank Assembly Accession | GCA_024181125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024181125.1 [NCBI] |
| BioSample | SAMN11253848 [NCBI] |
| BioProject | PRJNA284866 [NCBI] |
| Submitter | The University of Hong Kong |
| Submission Date | 2019-03-26T03:32:04.880 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 69710 |
| Isolation Source | subgingival plaque |
| Geo Location | China |
