Genome Meta Information: Treponema denticola OMZ 854 (GCA_024181645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024181645.1 | ||
| HOMD Taxon-ID | HMT-0584 | ||
| Species Name (in use by HOMD) | Treponema denticola | ||
| Organism Name (as deposited) | HMT-584 Treponema denticola OMZ 854 | ||
| Strain or Isolate | OMZ 854 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B; s__Treponema_B denticola_A |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore MiniION | ||
| Genome Coverage | 998 | ||
| Contigs |
|
||
| Total Sequence Length | 2,782,312 (bp) | ||
| GC Percentage | 37.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/645/GCA_024181645.1_ASM2418164v1 | ||
| CDS | 2555 | ||
| Genes | 2614 | ||
| mRNA | 2614 | ||
| misc RNA | 8 | ||
| rRNA | 6 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.19 % | ||
| CheckM Completeness | 98.47 % | ||
| CheckM Contamination | 1.01 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2418164v1 |
| GenBank Assembly Accession | GCA_024181645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024181645.1 [NCBI] |
| BioSample | SAMN14933810 [NCBI] |
| BioProject | PRJNA284866 [NCBI] |
| Submitter | The University of Hong Kong |
| Submission Date | 2020-05-15T14:28:04.847 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 158 |
| Isolation Source | acute necrotizing ulcerative gingivitis lesion |
| Geo Location | China |
