Genome Meta Information: Streptococcus infantis CF9-3 (GCA_024294745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024294745.1 | ||
| HOMD Taxon-ID | HMT-0638 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-638 Streptococcus infantis clade-638 CF9-3 | ||
| Strain or Isolate | CF9-3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis_M |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,792,604 (bp) | ||
| GC Percentage | 39.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/294/745/GCA_024294745.1_ASM2429474v1 | ||
| CDS | 1703 | ||
| Genes | 1782 | ||
| mRNA | 1782 | ||
| misc RNA | 50 | ||
| rRNA | 2 | ||
| tRNA | 26 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2429474v1 |
| GenBank Assembly Accession | GCA_024294745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024294745.1 [NCBI] |
| BioSample | SAMN29500156 [NCBI] |
| BioProject | PRJNA855844 [NCBI] |
| Submitter | Xian Jiaotong-Liverpool University |
| Submission Date | 2022-07-05T10:24:05.316 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JANCOD01 |
| NCBI TaxID | 2963148 |
| Isolation Source | |
| Geo Location | United Kingdom: Liverpool |
