Genome Meta Information: Streptococcus oralis CCUG 53468 (GCA_024399415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024399415.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis CCUG 53468 | ||
| Strain or Isolate | CCUG 53468 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_CS |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 395 | ||
| Contigs |
|
||
| Total Sequence Length | 2,002,022 (bp) | ||
| GC Percentage | 41.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/399/415/GCA_024399415.1_ASM2439941v1 | ||
| CDS | 1834 | ||
| Genes | 1950 | ||
| mRNA | 1950 | ||
| misc RNA | 42 | ||
| rRNA | 12 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.09 % | ||
| CheckM Completeness | 99.62 % | ||
| CheckM Contamination | 0.77 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2439941v1 |
| GenBank Assembly Accession | GCA_024399415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024399415.1 [NCBI] |
| BioSample | SAMN09081250 [NCBI] |
| BioProject | PRJNA305687 [NCBI] |
| Submitter | University of Gothenburg - CCUG |
| Submission Date | 2018-05-07T10:47:05.353 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1303 |
| Isolation Source | saliva |
| Geo Location | Sweden: Vastra Gotaland, Gothe |
