Taxon Table | Genome Table
Genome Meta Information:
Streptococcus
parasanguinis
DFI.4.46 (GCA_024463135.1)
| HOMD Genome-ID |
GCA_024463135.1
|
| HOMD Taxon-ID |
HMT-0411
|
| Species Name (in use by HOMD) |
Streptococcus parasanguinis
|
| Organism Name (as deposited) |
HMT-411 Streptococcus parasanguinis DFI.4.46
|
| Strain or Isolate |
DFI.4.46
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;
s__Streptococcus parasanguinis_S |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
100
|
| Contigs |
Number of Contigs: 245
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,204,282 (bp) |
| GC Percentage |
41.89
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/463/135/GCA_024463135.1_ASM2446313v1
|
| CDS |
2070
|
| Genes |
2149
|
| mRNA |
2149
|
| misc RNA |
36
|
| rRNA |
3
|
| tRNA |
39
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
94.27 %
|
| CheckM Completeness |
99.25 %
|
| CheckM Contamination |
0.79 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM2446313v1
|
| GenBank Assembly Accession |
GCA_024463135.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_024463135.1
[NCBI]
|
| BioSample |
SAMN28944500
[NCBI]
|
| BioProject |
PRJNA792599
[NCBI]
|
| Submitter |
University of Chicago
|
| Submission Date |
2022-06-09T14:20:06.260
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JANGCW01
|
| NCBI TaxID |
1318
|
| Isolation Source |
fecal sample
|
| Geo Location |
USA:Chicago
|
