Genome Meta Information: Yersinia pestis 20 (GCA_024498415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024498415.1 | ||
| HOMD Taxon-ID | HMT-0827 | ||
| Species Name (in use by HOMD) | Yersinia pestis | ||
| Organism Name (as deposited) | HMT-827 Yersinia pestis 20 | ||
| Strain or Isolate | 20 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia; s__Yersinia pestis |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 4,804,290 (bp) | ||
| GC Percentage | 47.62 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/498/415/GCA_024498415.1_ASM2449841v1 | ||
| CDS | 4264 | ||
| Genes | 4619 | ||
| mRNA | 4619 | ||
| misc RNA | 263 | ||
| rRNA | 19 | ||
| tRNA | 72 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.96 % | ||
| CheckM Completeness | 98.57 % | ||
| CheckM Contamination | 0.86 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2449841v1 |
| GenBank Assembly Accession | GCA_024498415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024498415.1 [NCBI] |
| BioSample | SAMN21848824 [NCBI] |
| BioProject | PRJNA766484 [NCBI] |
| Submitter | National Institute for Communicable Disease Control and Prevention |
| Submission Date | 2021-09-27T02:57:05.160 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 632 |
| Isolation Source | |
| Geo Location | China: Gansu, Mongolian Autono |
