Taxon Table | Genome Table
Genome Meta Information:
Corynebacterium
amycolatum
VH4147_1 (GCA_024539835.1)
| HOMD Genome-ID |
GCA_024539835.1
|
| HOMD Taxon-ID |
HMT-0031
|
| Species Name (in use by HOMD) |
Corynebacterium amycolatum
|
| Organism Name (as deposited) |
HMT-031 Corynebacterium amycolatum VH4147_1
|
| Strain or Isolate |
VH4147_1
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;
s__Corynebacterium amycolatum |
| Sequencing Technology |
lumina HiSeq
|
| Genome Coverage |
1827
|
| Contigs |
Number of Contigs: 142
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,663,586 (bp) |
| GC Percentage |
58.74
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/539/835/GCA_024539835.1_ASM2453983v1
|
| CDS |
2361
|
| Genes |
2437
|
| mRNA |
2437
|
| misc RNA |
14
|
| rRNA |
3
|
| tRNA |
58
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.01 %
|
| CheckM Completeness |
98.94 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM2453983v1
|
| GenBank Assembly Accession |
GCA_024539835.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_024539835.1
[NCBI]
|
| BioSample |
SAMN18038698
[NCBI]
|
| BioProject |
PRJNA704367
[NCBI]
|
| Submitter |
Federal University of Bahia
|
| Submission Date |
2021-02-23T13:43:09.933
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JAFJMD01
|
| NCBI TaxID |
43765
|
| Isolation Source |
clinical
|
| Geo Location |
Spain: Santander
|
