Genome Meta Information: Corynebacterium amycolatum VH1773 (GCA_024539915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024539915.1 | ||
| HOMD Taxon-ID | HMT-0031 | ||
| Species Name (in use by HOMD) | Corynebacterium amycolatum | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum VH1773 | ||
| Strain or Isolate | VH1773 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium amycolatum |
||
| Sequencing Technology | lumina HiSeq | ||
| Genome Coverage | 1827 | ||
| Contigs |
|
||
| Total Sequence Length | 2,641,344 (bp) | ||
| GC Percentage | 58.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/539/915/GCA_024539915.1_ASM2453991v1 | ||
| CDS | 2305 | ||
| Genes | 2369 | ||
| mRNA | 2369 | ||
| misc RNA | 13 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.04 % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 1.78 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2453991v1 |
| GenBank Assembly Accession | GCA_024539915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024539915.1 [NCBI] |
| BioSample | SAMN18038695 [NCBI] |
| BioProject | PRJNA704367 [NCBI] |
| Submitter | Federal University of Bahia |
| Submission Date | 2021-02-23T13:43:09.887 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAFJMG01 |
| NCBI TaxID | 43765 |
| Isolation Source | clinical |
| Geo Location | Spain: Santander |
