Genome Meta Information: Staphylococcus haemolyticus 4 (GCA_024668745.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024668745.2 | ||
| HOMD Taxon-ID | HMT-0120 | ||
| Species Name (in use by HOMD) | Staphylococcus haemolyticus | ||
| Organism Name (as deposited) | HMT-120 Staphylococcus haemolyticus 4 | ||
| Strain or Isolate | 4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus haemolyticus |
||
| Sequencing Technology | Oxford Nanopore GridION | ||
| Genome Coverage | 98.84 | ||
| Contigs |
|
||
| Total Sequence Length | 2,575,474 (bp) | ||
| GC Percentage | 32.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/668/745/GCA_024668745.2_ASM2466874v2 | ||
| CDS | 2579 | ||
| Genes | 2755 | ||
| mRNA | 2755 | ||
| misc RNA | 95 | ||
| rRNA | 19 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.17 % | ||
| CheckM Completeness | 90.01 % | ||
| CheckM Contamination | 0.75 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2466874v2 |
| GenBank Assembly Accession | GCA_024668745.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN30074499 [NCBI] |
| BioProject | PRJNA863437 [NCBI] |
| Submitter | Indian Institute of Technology Delhi |
| Submission Date | 2022-08-01T04:50:05.430 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1283 |
| Isolation Source | shrimp |
| Geo Location | India: Kodungallur, Kerala |
