Genome Meta Information: Aggregatibacter actinomycetemcomitans 3R (GCA_024678085.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024678085.1 | ||
| HOMD Taxon-ID | HMT-531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans 3R | ||
| Strain or Isolate | 3R | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | Illumina MiSeq +Oxford Nanopore | ||
| Genome Coverage | 108.6x | ||
| Contigs |
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| Total Sequence Length | 2,344,181 (bp) | ||
| GC Percentage | 44.37 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/678/085/GCA_024678085.1_ASM2467808v1 | ||
| CDS | 2228 | ||
| Genes | 2406 | ||
| mRNA | 2406 | ||
| misc RNA | 103 | ||
| rRNA | 19 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.8 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.12 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2467808v1 |
| GenBank Assembly Accession | GCA_024678085.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024678085.1 [NCBI] |
| BioSample | SAMN23845299 [NCBI] |
| BioProject | PRJNA787784 [NCBI] |
| Submitter | University of Groningen, University Medical Center Groningen |
| Submission Date | 2021-12-10T08:35:04.627 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JALDMT01 |
| NCBI TaxID | 714 |
| Isolation Source | Dept of Medical Microbiology, University Medical Center Groningen |
| Geo Location | Netherlands |
