Genome Meta Information: Yersinia pestis EV76-CN (GCA_024758685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024758685.1 | ||
| HOMD Taxon-ID | HMT-0827 | ||
| Species Name (in use by HOMD) | Yersinia pestis | ||
| Organism Name (as deposited) | HMT-827 Yersinia pestis EV76-CN | ||
| Strain or Isolate | EV76-CN | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia; s__Yersinia pestis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 432 | ||
| Contigs |
|
||
| Total Sequence Length | 4,792,816 (bp) | ||
| GC Percentage | 47.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/685/GCA_024758685.1_ASM2475868v1 | ||
| CDS | 4307 | ||
| Genes | 4667 | ||
| mRNA | 4667 | ||
| misc RNA | 270 | ||
| rRNA | 19 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 98.19 % | ||
| CheckM Contamination | 0.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2475868v1 |
| GenBank Assembly Accession | GCA_024758685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024758685.1 [NCBI] |
| BioSample | SAMN27736294 [NCBI] |
| BioProject | PRJNA830668 [NCBI] |
| Submitter | Third Military Medical University |
| Submission Date | 2022-04-22T04:55:03.963 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 665028 |
| Isolation Source | |
| Geo Location | China |
