Genome Meta Information: Corynebacterium diphtheriae 5521/17 (GCA_024969465.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024969465.1 | ||
| HOMD Taxon-ID | HMT-0591 | ||
| Species Name (in use by HOMD) | Corynebacterium diphtheriae | ||
| Organism Name (as deposited) | HMT-591 Corynebacterium diphtheriae 5521/17 | ||
| Strain or Isolate | 5521/17 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium diphtheriae |
||
| Sequencing Technology | Oxford Nanopore GridION; MiSeq | ||
| Genome Coverage | 601 | ||
| Contigs |
|
||
| Total Sequence Length | 2,452,932 (bp) | ||
| GC Percentage | 53.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/969/465/GCA_024969465.1_ASM2496946v1 | ||
| CDS | 2259 | ||
| Genes | 2338 | ||
| mRNA | 2338 | ||
| misc RNA | 10 | ||
| rRNA | 15 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.3 % | ||
| CheckM Completeness | 97.78 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2496946v1 |
| GenBank Assembly Accession | GCA_024969465.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024969465.1 [NCBI] |
| BioSample | SAMN30508153 [NCBI] |
| BioProject | PRJNA873913 [NCBI] |
| Submitter | National Institute of Public Health NIH - NRI |
| Submission Date | 2022-08-26T07:15:07.876 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1720349 |
| Isolation Source | wound |
| Geo Location | Poland |
