Genome Meta Information: Alistipes shahii WAL 8301 (GCA_025145845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025145845.1 | ||
| HOMD Taxon-ID | HMT-966 | ||
| Species Name (in use by HOMD) | Alistipes shahii | ||
| Organism Name (as deposited) | HMT-966 Alistipes shahii WAL 8301 | ||
| Strain or Isolate | WAL 8301 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes shahii |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore | ||
| Genome Coverage | 100.0x | ||
| Contigs |
|
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| Total Sequence Length | 3,809,618 (bp) | ||
| GC Percentage | 57.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/845/GCA_025145845.1_ASM2514584v1 | ||
| CDS | 3192 | ||
| Genes | 3276 | ||
| mRNA | 3276 | ||
| misc RNA | 27 | ||
| rRNA | 6 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.95 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2514584v1 |
| GenBank Assembly Accession | GCA_025145845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025145845.1 [NCBI] |
| BioSample | SAMN20222638 [NCBI] |
| BioProject | PRJNA746600 [NCBI] |
| Submitter | Stanford University |
| Submission Date | 2021-07-14T17:26:19.250 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 717959 |
| Isolation Source | |
| Geo Location | not applicable |
