Genome Meta Information: Bacteroides caccae ATCC 43185 (GCA_025146315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025146315.1 | ||
| HOMD Taxon-ID | HMT-967 | ||
| Species Name (in use by HOMD) | Bacteroides caccae | ||
| Organism Name (as deposited) | HMT-967 Bacteroides caccae ATCC 43185 | ||
| Strain or Isolate | ATCC 43185 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides; s__Bacteroides caccae |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore | ||
| Genome Coverage | 100.0x | ||
| Contigs |
|
||
| Total Sequence Length | 4,570,799 (bp) | ||
| GC Percentage | 41.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/146/315/GCA_025146315.1_ASM2514631v1 | ||
| CDS | 3668 | ||
| Genes | 3767 | ||
| mRNA | 3767 | ||
| misc RNA | 13 | ||
| rRNA | 15 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.22 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 99.95 % | ||
| CheckM2 Contamination | 0.53 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2514631v1 |
| GenBank Assembly Accession | GCA_025146315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025146315.1 [NCBI] |
| BioSample | SAMN20222641 [NCBI] |
| BioProject | PRJNA746600 [NCBI] |
| Submitter | Stanford University |
| Submission Date | 2021-07-14T17:26:19.290 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 47678 |
| Isolation Source | |
| Geo Location | not applicable |
