Taxon Table | Genome Table
Genome Meta Information:
Dietzia
cinnamea
p3-SID1701 (GCA_025150845.1)
| HOMD Genome-ID |
GCA_025150845.1
|
| HOMD Taxon-ID |
HMT-0368
|
| Species Name (in use by HOMD) |
Dietzia cinnamea
|
| Organism Name (as deposited) |
HMT-368 Dietzia cinnamea p3-SID1701
|
| Strain or Isolate |
p3-SID1701
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;
s__Dietzia cinnamea |
| Sequencing Technology |
Illumina NextSeq 550
|
| Genome Coverage |
84
|
| Contigs |
Number of Contigs: 220
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,626,026 (bp) |
| GC Percentage |
70.67
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/845/GCA_025150845.1_ASM2515084v1
|
| CDS |
3415
|
| Genes |
3491
|
| mRNA |
3491
|
| misc RNA |
24
|
| rRNA |
0
|
| tRNA |
51
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.22 %
|
| CheckM Completeness |
97.9 %
|
| CheckM Contamination |
1.12 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM2515084v1
|
| GenBank Assembly Accession |
GCA_025150845.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_025150845.1
[NCBI]
|
| BioSample |
SAMN25653657
[NCBI]
|
| BioProject |
PRJNA803478
[NCBI]
|
| Submitter |
University of Wisconsin - Madison
|
| Submission Date |
2022-02-04T14:00:14.417
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JALXTN01
|
| NCBI TaxID |
321318
|
| Isolation Source |
Occiput swab
|
| Geo Location |
USA: Wisconsin, Madison
|
